18#include <seqan3/search/kmer_index/shape.hpp>
29 uint8_t kmer_size{20u};
30 uint32_t window_size{kmer_size};
32 seqan3::shape shape{seqan3::ungapped{kmer_size}};
33 bool use_filesize_dependent_cutoff{
false};
34 uint8_t kmer_count_cutoff{1u};
49 void print_timings()
const
54 std::cerr <<
"Wall clock time [s]: " << wall_clock_timer.in_seconds() <<
'\n';
55 std::cerr <<
"Peak memory usage " << formatted_peak_ram() <<
'\n';
56 std::cerr <<
"Compute minimiser [s]: " << compute_minimiser_timer.in_seconds() / threads <<
'\n';
57 std::cerr <<
"Write minimiser files [s]: " << write_minimiser_timer.in_seconds() / threads <<
'\n';
58 std::cerr <<
"Write header files [s]: " << write_header_timer.in_seconds() / threads <<
'\n';
Provides raptor::formatted_peak_ram.
T setprecision(T... args)
Definition: prepare_arguments.hpp:28