Collaboration diagram for raptor::raptor_index< data_t >:

Public Member Functions
std::vector< std::vector< std::string > > const &	bin_path () const

bool	compressed () const

double	fpr () const

data_t &	ibf ()

data_t const &	ibf () const

bool	is_hibf () const

template<seqan3::cereal_input_archive archive_t>
void	load_old_parameters (archive_t &archive)
	Load parameters from old index format for use with raptor upgrade.

template<seqan3::cereal_input_archive archive_t>
void	load_parameters (archive_t &archive)

raptor_index &	operator= (raptor_index &&)=default

raptor_index &	operator= (raptor_index const &)=default

uint8_t	parts () const

	raptor_index (build_arguments const &arguments)

	raptor_index (raptor_index &&)=default

	raptor_index (raptor_index const &)=default

template<typename other_data_t >
	raptor_index (raptor_index< other_data_t > &&other)

template<typename other_data_t >
	raptor_index (raptor_index< other_data_t > const &other)

	raptor_index (window const window_size, seqan3::shape const shape, uint8_t const parts, bool const compressed, std::vector< std::vector< std::string > > const &bin_path, double const fpr, data_t &&ibf)

template<seqan3::cereal_archive archive_t>
void	serialize (archive_t &archive)
	Serialisation support function.

seqan3::shape	shape () const

uint64_t	window_size () const

Static Public Attributes
static constexpr seqan3::data_layout	data_layout_mode = data_t::data_layout_mode

static constexpr uint32_t	version {2u}

Private Member Functions
template<seqan3::cereal_archive archive_t>
void	load_old_index (archive_t &archive)
	Load old index format for use with raptor upgrade.

Private Attributes
std::vector< std::vector< std::string > >	bin_path_ {}

bool	compressed_ {index_structure::is_compressed<data_t>}

double	fpr_ {}

data_t	ibf_ {}

bool	is_hibf_ {index_structure::is_hibf<data_t>}

uint8_t	parts_ {}

seqan3::shape	shape_ {}

uint64_t	window_size_ {}

Friends
template<seqan3::data_layout data_layout_mode_>
class	index_upgrader

Member Function Documentation

◆ serialize()

template<typename data_t = index_structure::ibf>

template<seqan3::cereal_archive archive_t>

void raptor::raptor_index< data_t >::serialize ( archive_t & archive )

inline

Serialisation support function.

Template Parameters

archive_t Type of archive; must satisfy seqan3::cereal_archive.

Parameters

[in] archive The archive being serialised from/to.

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The documentation for this class was generated from the following file: