Raptor 3.0.0-rc.1
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
 
construct_ibf.cpp File Reference

Implements raptor::hibf::construct_ibf. More...

+ Include dependency graph for construct_ibf.cpp:

Namespaces

namespace  raptor::hibf
 Must be first include.
 

Functions

template<seqan3::data_layout data_layout_mode>
seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf (robin_hood::unordered_flat_set< size_t > &parent_kmers, robin_hood::unordered_flat_set< size_t > &kmers, size_t const number_of_bins, lemon::ListDigraph::Node const &node, build_data< data_layout_mode > &data, build_arguments const &arguments, bool is_root)
 
template seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf< seqan3::data_layout::compressed > (robin_hood::unordered_flat_set< size_t > &, robin_hood::unordered_flat_set< size_t > &, size_t const, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::compressed > &, build_arguments const &, bool)
 
template seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf< seqan3::data_layout::uncompressed > (robin_hood::unordered_flat_set< size_t > &, robin_hood::unordered_flat_set< size_t > &, size_t const, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::uncompressed > &, build_arguments const &, bool)
 

Detailed Description

Implements raptor::hibf::construct_ibf.

Author
Enrico Seiler <enrico.seiler AT fu-berlin.de>