File List

Here is a list of all documented files with brief descriptions:

[detail level 1234]

▼ raptor
▼ argument_parsing
build_arguments.hpp	Provides raptor::build_arguments
build_parsing.hpp	Provides raptor::build_parsing
compute_bin_size.hpp	Provides raptor::compute_bin_size and raptor::max_bin_count
init_shared_meta.hpp	Provides raptor::init_shared_meta
memory_usage.hpp	Provides raptor::formatted_peak_ram
parse_bin_path.hpp	Provides raptor::parse_bin_path
prepare_arguments.hpp	Provides raptor::prepare_arguments
prepare_parsing.hpp	Provides raptor::prepare_parsing
search_arguments.hpp	Provides raptor::search_arguments
search_parsing.hpp	Provides raptor::search_parsing
shared.hpp	Provides raptor::validate_shape
timer.hpp	Provides raptor::timer
upgrade_arguments.hpp	Provides raptor::upgrade_arguments
upgrade_parsing.hpp	Provides raptor::upgrade_parsing
validators.hpp	Provides various validator
▼ build
► hibf
bin_prefixes.hpp	Provides layout file string prefixes
bin_size_in_bits.hpp	Provides raptor::hibf::bin_size_in_bits
build_data.hpp	Provides raptor::hibf::build_data
chopper_build.hpp	Provides raptor::hibf::chopper_build
chopper_pack_record.hpp	Provides raptor::hibf::chopper_pack_record
compute_kmers.hpp	Provides raptor::hibf::compute_kmers
construct_ibf.hpp	Provides raptor::hibf::construct_ibf
create_ibfs_from_chopper_pack.hpp	Provides raptor::hibf::create_ibfs_from_chopper_pack
hierarchical_build.hpp	Provides raptor::hibf::hierarchical_build
initialise_max_bin_kmers.hpp	Provides raptor::hibf::initialise_max_bin_kmers
insert_into_ibf.hpp	Provides raptor::hibf::insert_into_ibf
loop_over_children.hpp	Provides raptor::hibf::loop_over_children
node_data.hpp	Provides raptor::hibf::node_data
parse_chopper_pack_header.hpp	Provides raptor::hibf::parse_chopper_pack_header
parse_chopper_pack_line.hpp	Provides raptor::hibf::parse_chopper_pack_line
read_chopper_pack_file.hpp	Provides raptor::hibf::read_chopper_pack_file
update_user_bins.hpp	Provides raptor::hibf::update_user_bins
build_ibf.hpp	Provides raptor::build_ibf
index_factory.hpp	Provides raptor::index_factory
max_count_per_partition.hpp	Provides raptor::max_count_per_partition
partition_config.hpp	Provides raptor::partition_config
raptor_build.hpp	Provides raptor::raptor_build
store_index.hpp	Provides raptor::store_index
▼ layout
raptor_layout.hpp	Provides raptor::chopper_layout
▼ prepare
compute_minimiser.hpp	Provides raptor::compute_minimiser
cutoff.hpp	Provides raptor::cutoff
▼ search
do_parallel.hpp	Provides raptor::do_parallel
load_index.hpp	Provides raptor::load_index
search.hpp	Provides raptor::raptor_search
search_hibf.hpp	Provides raptor::search_hibf
search_ibf.hpp	Provides raptor::search_ibf
search_partitioned_ibf.hpp	Provides raptor::search_partitioned_ibf
search_singular_ibf.hpp	Provides raptor::search_singular_ibf
sync_out.hpp	Provides raptor::sync_out
▼ threshold
forward_strand_minimiser.hpp	Provides raptor::threshold::forward_strand_minimiser
logspace.hpp	Provides functionality for working with probabilities in logspace
multiple_error_model.hpp	Provides raptor::threshold::multiple_error_model
one_error_model.hpp	Provides raptor::threshold::one_error_model
one_indirect_error_model.hpp	Provides raptor::threshold::one_indirect_error_model
pascal_row.hpp	Provides raptor::threshold::pascal_row
precompute_correction.hpp	Provides raptor::threshold::precompute_correction
precompute_threshold.hpp	Provides raptor::threshold::precompute_threshold
threshold.hpp	Provides raptor::threshold::threshold
threshold_parameters.hpp	Provides raptor::threshold::threshold_parameters
▼ upgrade
index_upgrader.hpp	Provides raptor::index_upgrader
upgrade.hpp	Provides raptor::raptor_upgrade
adjust_seed.hpp	Provides raptor::adjust_seed
call_parallel_on_bins.hpp	Provides raptor::call_parallel_on_bins
dna4_traits.hpp	Provides raptor::dna4_traits
file_reader.hpp	Provides raptor::file_reader
hierarchical_interleaved_bloom_filter.hpp	Provides raptor::hierarchical_interleaved_bloom_filter
index.hpp	Provides raptor::raptor_index
raptor.hpp	Provides raptor callable
strong_types.hpp	Provides raptor::window
version.hpp	Provides RAPTOR version macros and global variables
▼ src
▼ argument_parsing
build_parsing.cpp	Implements raptor::build_parsing
compute_bin_size.cpp	Implements raptor::compute_bin_size and raptor::max_bin_count
init_shared_meta.cpp	Implements raptor::init_shared_meta
parse_bin_path.cpp	Implements raptor::parse_bin_path
prepare_parsing.cpp	Implements raptor::prepare_parsing
search_parsing.cpp	Implements raptor::search_parsing
upgrade_parsing.cpp	Implements raptor::upgrade_parsing
▼ build
► hibf
bin_size_in_bits.cpp	Implements raptor::hibf::bin_size_in_bits
chopper_build.cpp	Implements raptor::hibf::chopper_build
compute_kmers.cpp	Implements raptor::hibf::compute_kmers
construct_ibf.cpp	Implements raptor::hibf::construct_ibf
create_ibfs_from_chopper_pack.cpp	Implements raptor::hibf::create_ibfs_from_chopper_pack
hierarchical_build.cpp	Implements raptor::hibf::hierarchical_build
initialise_max_bin_kmers.cpp	Implements raptor::hibf::initialise_max_bin_kmers
insert_into_ibf.cpp	Implements raptor::hibf::insert_into_ibf
loop_over_children.cpp	Implements raptor::hibf::loop_over_children
parse_chopper_pack_header.cpp	Implements raptor::hibf::parse_chopper_pack_header
parse_chopper_pack_line.cpp	Implements raptor::hibf::parse_chopper_pack_line
read_chopper_pack_file.cpp	Implements raptor::hibf::read_chopper_pack_file
update_user_bins.cpp	Implements raptor::hibf::update_user_bins
build_ibf.cpp	Implements raptor::build_ibf
max_count_per_partition.cpp	Implements raptor::max_count_per_partition
raptor_build.cpp	Implements raptor::raptor_build
▼ layout
raptor_layout.cpp	Implements raptor::chopper_layout
▼ prepare
compute_minimiser.cpp	Implements raptor::compute_minimiser
▼ search
raptor_search.cpp	Implements raptor::raptor_search
search_hibf.cpp	Implements raptor::search_hibf
search_ibf.cpp	Implements raptor::search_ibf
search_partitioned_ibf.cpp	Implements raptor::search_partitioned_ibf
▼ threshold
multiple_error_model.cpp	Implements raptor::threshold::multiple_error_model
one_error_model.cpp	Implements raptor::threshold::one_error_model
one_indirect_error_model.cpp	Implements raptor::threshold::one_indirect_error_model
pascal_row.cpp	Implements raptor::threshold::pascal_row
precompute_correction.cpp	Implements raptor::threshold::precompute_correction
precompute_threshold.cpp	Implements raptor::threshold::precompute_threshold
▼ upgrade
raptor_upgrade.cpp	Implements raptor::raptor_upgrade
raptor.cpp	Implements raptor